Package: pandemonium 1.0.0

Gabriel McCoy

pandemonium: High Dimensional Analysis in Linked Spaces

A 'shiny' GUI that performs high dimensional cluster analysis. This tool performs data preparation, clustering and visualisation within a dynamic GUI. With interactive methods allowing the user to change settings all without having to to leave the GUI. An earlier version of this package was described in Laa and Valencia (2022) <doi:10.1140/epjp/s13360-021-02310-1>.

Authors:Gabriel McCoy [aut, cre], Ursula Laa [aut], German Valencia [aut]

pandemonium_1.0.0.tar.gz
pandemonium_1.0.0.zip(r-4.7)pandemonium_1.0.0.zip(r-4.6)pandemonium_1.0.0.zip(r-4.5)
pandemonium_1.0.0.tgz(r-4.6-any)pandemonium_1.0.0.tgz(r-4.5-any)
pandemonium_1.0.0.tar.gz(r-4.7-any)pandemonium_1.0.0.tar.gz(r-4.6-any)
pandemonium_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
pandemonium/json (API)

# Install 'pandemonium' in R:
install.packages('pandemonium', repos = c('https://gabrielmccoy.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gabrielmccoy/pandemonium/issues

Pkgdown/docs site:https://gabrielmccoy.github.io

Datasets:
  • Bikes - Bike sharing data with model information

On CRAN:

Conda:

6.66 score 3 stars 2 scripts 503 downloads 17 exports 139 dependencies

Last updated from:4e00d085b4. Checks:2 ERROR, 7 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR208
source / vignettesOK288
linux-release-x86_64OK208
macos-release-arm64OK142
macos-oldrel-arm64OK194
windows-develERROR130
windows-releaseOK150
windows-oldrelOK146
wasm-releaseOK177

Exports:%>%chi2ScoregetBenchmarkInformationgetClusterDistsgetDistsmakePlotsmakeResultsnormCoordsoutsideScorepandemoniumpullCoordspullCoordsNoCovrawCoordstSNEumapuserCoordswriteResults

Dependencies:abindalphahullashaskpassassertthatbase64encBHbitopsbootbslibcachemcassowaryrclasscliclustercommonmarkcpp11crayoncrosstalkcurldata.tabledeldirdendextendDEoptimRdetourrdigestdiptestdplyrdqrngDTenergyevaluatefarverfastmapflexmixFNNfontawesomefpcfsgenericsgeozooggpcpggplot2gluegridExtragslgtablehighrhmshtmltoolshtmlwidgetshttpuvhttrigraphinterpirlbaisobandjquerylibjsonlitekernlabknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmclustmemoisemgcvmimeminervamodeltoolsnlmennetopensslotelpillarpkgconfigplotlypolyclipprabclusprettyunitsprogresspromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppProgressrlangrmarkdownrobustbaseRSpectraRtsneS7sassscalessgeostatshinyshinyFeedbackshinythemessitmosourcetoolsspspatstat.dataspatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilssplancsstringistringrsystensortibbletidyrtidyselecttinytextourrutf8uwotvctrsviridisviridisLitewithrxfunxtableyaml

Data Input for pandemonium
Inputs | Optional inputs | Data Inputs | Function inputs | The data page | Groupings | Label | Moving Variables
Rendered fromdatainput.Rmdusingknitr::rmarkdown

Last update: 2026-05-21
Started: 2025-08-30

Using the Data Analysis Page
Overview | Tabs | Input | Side bar | Outputs | Statistics | Benchmarks | Coordinates | Distance breakdown | Dimension Reduction | Tour Display | Comparison | Options | A note on linked brushing
Rendered fromanalysis-pages.Rmdusingknitr::rmarkdown

Last update: 2026-04-29
Started: 2025-08-30

Understanding the getScore Function Input
Overview | Writing a getScore function | Input | Output | Example
Rendered fromget-scores.Rmdusingknitr::rmarkdown

Last update: 2026-04-20
Started: 2025-08-30

How to Use makePlots
Overview | settings | Plot specific settings | "tour" | "dimRed" | results
Rendered frommake-plots.Rmdusingknitr::rmarkdown

Last update: 2026-04-20
Started: 2025-08-30

How to Use writeResults
Overview | Input | Data frames | Settings | File name | Coordinate functions | Space properties | Output
Rendered fromoutput.Rmdusingknitr::rmarkdown

Last update: 2026-04-20
Started: 2025-09-15

Understanding the dimReduction Function Input
Overview | Required function inputs: | What the function should return: | How to write new functions
Rendered fromdim-reduction.Rmdusingknitr::rmarkdown

Last update: 2026-02-10
Started: 2025-08-30

Understanding the getCoords Function Input
Overview | Provided coordinate functions | normcoords | pullCoords() | pullCoordsNoCov() | rawCoords() | userCoords() | Writing getCoords functions | Inputs | Ouput | Example
Rendered fromget-coords.Rmdusingknitr::rmarkdown

Last update: 2025-11-27
Started: 2025-08-30